Index

A

AdaptiveTilingExperiment (class in extendedmosaicperm.experiments) (class in extendedmosaicperm.experiments.adaptive_tiling)

B

BaseExperiment (class in extendedmosaicperm.experiments) (class in extendedmosaicperm.experiments.base)

build_adaptive_tiling() (in module extendedmosaicperm) (in module extendedmosaicperm.tilings)

C

compare_method_timings_all_sizes() (SignFlipExperiment method), [1] compute_mosaic_residuals() (ExtendMosaicFactorTest method), [1]

compute_power_table() (in module extendedmosaicperm.experiments) (in module extendedmosaicperm.experiments.plotting)

E

enrich_flatten() (in module extendedmosaicperm.experiments) (in module extendedmosaicperm.experiments.plotting) estimate_covariance() (in module extendedmosaicperm.tilings) extendedmosaicperm module extendedmosaicperm.experiments module extendedmosaicperm.experiments.adaptive_tiling module extendedmosaicperm.experiments.base module extendedmosaicperm.experiments.plotting module extendedmosaicperm.experiments.ridge module

extendedmosaicperm.experiments.sign_flip module extendedmosaicperm.factor module extendedmosaicperm.factor_data module extendedmosaicperm.tilings module ExtendMosaicFactorTest (class in extendedmosaicperm) (class in extendedmosaicperm.factor) extract_method() (AdaptiveTilingExperiment method), [1] (BaseExperiment method), [1] (RidgeExperiment method), [1] (SignFlipExperiment method), [1]

F

FactorModelDataGenerator (class in extendedmosaicperm) (class in extendedmosaicperm.factor_data)

flatten() (BaseExperiment method), [1] flip_sign_residuals() (ExtendMosaicFactorTest method), [1]

G

generate_data_block_correlation() (FactorModelDataGenerator method), [1] generate_data_diagonal_plus_common_factor() (FactorModelDataGenerator method), [1]

generate_data_random_correlation() (FactorModelDataGenerator method), [1] greedy_grouping() (in module extendedmosaicperm.tilings)

L

load() (BaseExperiment method), [1]

M

module extendedmosaicperm extendedmosaicperm.experiments extendedmosaicperm.experiments.adaptive_tiling extendedmosaicperm.experiments.base extendedmosaicperm.experiments.plotting extendedmosaicperm.experiments.ridge extendedmosaicperm.experiments.sign_flip extendedmosaicperm.factor extendedmosaicperm.factor_data extendedmosaicperm.tilings

P

parse_label() (in module extendedmosaicperm.experiments.plotting) plot_figure3_panels() (in module extendedmosaicperm.experiments) (in module extendedmosaicperm.experiments.plotting) plot_power() (BaseExperiment method), [1] plot_pval_histogram() (BaseExperiment method), [1]

plot_qq() (BaseExperiment method), [1] plot_qq_grid_all_sizes() (in module extendedmosaicperm.experiments) (in module extendedmosaicperm.experiments.plotting) plot_qq_grid_generators_by_alpha() (in module extendedmosaicperm.experiments) (in module extendedmosaicperm.experiments.plotting)

R

results (BaseExperiment attribute), [1] ridge_alphas (ExtendMosaicFactorTest attribute), [1] RidgeExperiment (class in extendedmosaicperm.experiments) (class in extendedmosaicperm.experiments.ridge)

rng (ExtendMosaicFactorTest attribute), [1] run() (AdaptiveTilingExperiment method), [1] (RidgeExperiment method), [1] (SignFlipExperiment method), [1]

S

save() (BaseExperiment method), [1] sign_flipping (ExtendMosaicFactorTest attribute), [1]

SignFlipExperiment (class in extendedmosaicperm.experiments) (class in extendedmosaicperm.experiments.sign_flip) summarize() (BaseExperiment method), [1]